YHR029c: YHI9, the yeast member of the phenazine biosynthesis PhzF enzyme superfamily.

(JPEG)
A: Topology of YHI9 showing the bimodular structure of the protein (figure made by Tops[26]). Each domain comprises about half of the protein. The -sheets of the N-terminal and C-terminal domains are colored red and blue respectively. The two -strands involved in domain swapping (9) are colored purple. The helical insertions common to the two domains are in orange (1, 2) and the supplementary helices in domain b are colored green (3b, 4b). B: Superposition of the N-terminal (red) and C-terminal (blue) domains of YHI9. C: Ribbon representation of YHI9 (left). The color code is the same as for (A). For clarity, only a few prominent secondary structure elements are labelled. The 120° angle between the axes of the two barrels is highlighted in dotted lines. Molecular surface colored in increasing tones of red corresponding to increasing surface residue conservation (right), calculated with the 50 proteins of highest sequence homology determined by the Consurf server.[27] D: Ribbon (left) and molecular surface (right) representation of YHI9, perpendicular view in respect to (C). Residues of the putative catalytic site [detailed in Fig. 3(A)] are shown in stick representation. E: Representation of the dimer of YHI9 generated by crystal symmetry.

Function Unknown
Fold Kinked double hotdog fold
Resolution 2.2
Remarks Domain duplication. Domain swapping
PDB code Not yet
Publication Liger D, Quevillon-Cheruel S, Sorel I, Bremang M, Blondeau K, Aboulfath I, Janin J, van Tilbeurgh H, Leulliot N. Crystal structure of YHI9, the yeast member of the phenazine biosynthesis PhzF enzyme superfamily. Proteins, in press

In the Pseudomonas bacterial genomes, the PhzF proteins are involved in the production of phenazine derivative antibiotic and antifungal compounds. The PhzF superfamily however also encompasses proteins in all genomes from bacteria to eukaryotes, for which no function has been assigned. We have determined the three dimensional crystal structure at 2.05 A resolution of YHI9, the yeast member of the PhzF family. YHI9 has a fold similar to bacterial diaminopimelate epimerase, revealing a bimodular structure with an internal symmetry. Residue conservation identifies a putative active site at the interface between the two domains. Evolution of this protein by gene duplication, gene fusion and domain swapping from an ancestral gene containing the "hot dog" fold, identifies the protein as a "kinked double hot dog" fold.